Short answer:
Without a doing tons of work and spending time and money investigating. You will not be able locate the reason for lower boost pressure than other cars.
And in the end it will be a built tolerance stack up problem.
Meaning - All the parts in a system (engine in this case) separately each part can pass all quality requirements. And fit into the measurement process as a good part.
But when all the parts are assembled into a working, running system it will be slightly different than other systems on one area. But greater in some other measure of performance in a different area.
I know this is not easy to hear when your boost readings are slightly less than others. I feel your pain.
But trust me your car is healthy. With 500 hp at the wheels it is a good strong performer.
This is the reason why other car makers do not place actual numbers on dash gauges. And it is possible to build dash gauges that can be manipulated (cheated)
So you have no real idea what is happening. This not the case W/ the FGT.
A dash gauge can be softened or dampened in a zone so all cars appear to operate the same as others cars. The GT has none of that stuff.
Your car is not flawed.
I have seen cars that only read 10 PSI. max boost
And test @ the wheels lower than your car ..
It is my opinion that if you keep pushing Ford. The answer will be the same.
Your Dyno numbers are good, it is a good strong car.
Glenn!
I asked Alex to review your thread and issue. Alex was the data gathering engineer for SVT Team during the FGT program. I think this journey is coming to an end.
Your Friend,
daniel