FYI there are 2 major types of resin used in CF construction. Epoxy, and polyester. The polyester has a lower temperature threshold for the most part. Most cosmetic non prepreg CF is done in polyester resin.
Actually many parts in carbon fiber are done in Vinyl ester which is a modified epoxy that is used like polyester.
If you have to fill the scrathes, I would try using the automotive clear urethane. Go to a collison shop and be ready to use it there, and I am sure they would give you a small amount already mixed. Many guys actually mix up more than is needed to spray up on a vehicle and will dump out the leftovers. If you take a plastic cup and a small artists brush, you could fill the scratch and then sand and polish as stormcat said. I would be careful while wet sanding since you never know how thin the clear coat was around the area. Then polish it with a low speed wool pad and polishing compound.
Start off with 400-600 and work your way up to a 1200 grit wet sandpaper.
This will polish better. Stormcat is correct about epoxy being used on some, but the automotive clear coat is clear enough that it won't normally show.
I hope this helps!
Be careful using epoxy unless you know how yellow it gets when it has been cured for a while.